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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15106548_15116583_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15106548 - 15116583
Intron Length:
10036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTATGTTCT
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCTCTTTTATTT
Flanking Amino Acid:
DGAGHIKSPSERSLLKQIYH
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
67.8
38.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86
0.81
0.9
80.4
36.6
Minor 5ss
50.8
0.03
2.3
64.3
41
Minor BPS
50.8
0.1
1.5
65.03
40.3

Associated Gene:

Gene:
C11orf74
Ensembl Gene ID:
ENSAPLG00000013519
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014074
15079987 - 15117596
37610