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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15148660_15149287_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15148660 - 15149287
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCACGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
TTTTGCCCACGT
Flanking Amino Acid:
CMKMELRHLEDHQSHCDFST
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
66.1
0.36
1
62.1
38.9
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
40.5
-0.6
2.5
68.6
47.9

Associated Gene:

Gene:
TRAF6
Ensembl Gene ID:
ENSAPLG00000013488
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045982
15141954 - 15153227
11274
ENSAPLT00000018333
15136624 - 15153403
16780
ENSAPLT00000014047
15140298 - 15153227
12930