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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15149447_15149993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15149447 - 15149993
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTGATAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTGATAACA
Flanking Amino Acid:
ATSMAYEDKELHDQTCPLAN
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.8
41.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.1
0.5
1
66.8
42.8
Minor 5ss
36.5
-1.5
3
52.2
44.2
Minor BPS
51.7
0.05
2.3
72.69
39.1

Associated Gene:

Gene:
TRAF6
Ensembl Gene ID:
ENSAPLG00000013488
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045982
15141954 - 15153227
11274
ENSAPLT00000018333
15136624 - 15153403
16780
ENSAPLT00000014047
15140298 - 15153227
12930