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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15150066_15151449_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15150066 - 15151449
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GGAAAATTAATT
Flanking Amino Acid:
YCNTMLIRQQMPNHYDNDCP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.5
0.57
0.9
73.7
41.5
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
47.7
-0.1
1.8
62.21
40.8

Associated Gene:

Gene:
TRAF6
Ensembl Gene ID:
ENSAPLG00000013488
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014047
15140298 - 15153227
12930
ENSAPLT00000045982
15141954 - 15153227
11274
ENSAPLT00000018333
15136624 - 15153403
16780