Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1515928_1516218_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1515928 - 1516218

Intron Length:

291

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTTTGTAGC

5'SS Class:

weak_major

3'SS Sequence:

ATTTATTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

CTTTTAGTAATT

Flanking Amino Acid:

HPLFFILIYFSGPAEGLGKI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.1

0.1

1.3

54.2

42.7

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

87.8

0.85

0.8

85.3

34.2

Minor 5ss

41.4

-1

2.5

56.8

40.5

Minor BPS

50.1

0.08

2.2

76.06

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030482

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027765

1515891 - 1610801

94911