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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1516308_1570850_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1516308 - 1570850
Intron Length:
54543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
DTPFPQGIELFCQPGGWQLS
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030482
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027765
1515891 - 1610801
94911