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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15168351_15173276_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15168351 - 15173276
Intron Length:
4926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCCTGCTGATGG
Flanking Amino Acid:
HSFSGGTCLLERRYSRSRPK
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74.2
37
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
88.5
0.87
0.7
80.8
31.2
Minor 5ss
39.8
-1.1
3.1
53.4
45.6
Minor BPS
36.6
-1.1
2.2
34.91
46.2

Associated Gene:

Gene:
PRR5L
Ensembl Gene ID:
ENSAPLG00000013479
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030671
15166968 - 15208043
41076
ENSAPLT00000019245
15167968 - 15208468
40501
ENSAPLT00000014034
15167968 - 15208468
40501
ENSAPLT00000037728
15166968 - 15208043
41076