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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15173404_15173839_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15173404 - 15173839
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAGC
5'SS Class:
major
3'SS Sequence:
GTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CGTGTTTGAATT
Flanking Amino Acid:
SIVQMLLILQSVHEPTGPSE
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.9
42.4
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
75.8
0.58
1
71.2
43.2
Minor 5ss
25.8
-2.8
3.2
33.4
42.1
Minor BPS
49.8
0.07
1.5
64.29
41.1

Associated Gene:

Gene:
PRR5L
Ensembl Gene ID:
ENSAPLG00000013479
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014034
15167968 - 15208468
40501
ENSAPLT00000037728
15166968 - 15208043
41076
ENSAPLT00000030671
15166968 - 15208043
41076
ENSAPLT00000019245
15167968 - 15208468
40501