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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15177425_15180554_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15177425 - 15180554
Intron Length:
3130

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTTCTCCCAATC
Flanking Amino Acid:
FIEEKVKLCEGEDRIEILSE
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.16
0.7
89.2
23.6
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
76.3
0.59
0.9
72.9
37.4
Minor 5ss
25.7
-2.8
3.6
34.4
41.2
Minor BPS
50.4
-0
1.8
68.7
36.6

Associated Gene:

Gene:
PRR5L
Ensembl Gene ID:
ENSAPLG00000013479
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030671
15166968 - 15208043
41076
ENSAPLT00000014034
15167968 - 15208468
40501
ENSAPLT00000037728
15166968 - 15208043
41076