About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15233302_15233414_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15233302 - 15233414
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
CGGGCTGGAGCC
Flanking Amino Acid:
IAASPEEAAQLVAALHSLTR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
72.7
0.51
0.9
65.3
36.3
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
35.8
-1
2.1
39.03
40.3

Associated Gene:

Gene:
COMMD9
Ensembl Gene ID:
ENSAPLG00000021527
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041598
15233027 - 15238599
5573