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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15233555_15233734_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15233555 - 15233734
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
NLLTKIILENVCAWRNEAQA
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
74.3
36.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
87.1
0.83
0.7
82.8
25.8
Minor 5ss
35.2
-1.7
3.5
49.9
46.4
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
COMMD9
Ensembl Gene ID:
ENSAPLG00000021527
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041598
15233027 - 15238599
5573