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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15236980_15237810_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15236980 - 15237810
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATACAC
Flanking Amino Acid:
AVPTCLLQLKIQEDAALCGN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.8
83.8
31.2
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
52.2
0.05
2
72.18
38.7

Associated Gene:

Gene:
COMMD9
Ensembl Gene ID:
ENSAPLG00000021527
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041598
15233027 - 15238599
5573