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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15266279_15267843_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15266279 - 15267843
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGTAACT
Flanking Amino Acid:
PSYSEAVLDQSRPPWFDLPP
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
76.4
0.59
1
68.8
42.1
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
66.9
0.61
2.2
93.33
34.8

Associated Gene:

Gene:
LDLRAD3
Ensembl Gene ID:
ENSAPLG00000013350
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013902
15266017 - 15346204
80188