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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15268190_15313243_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15268190 - 15313243
Intron Length:
45054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TGAAACTTACCT
Flanking Amino Acid:
SDEESCESPQEAGSGQDYVT
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
52.9
0.17
1.9
71.9
44.1

Associated Gene:

Gene:
LDLRAD3
Ensembl Gene ID:
ENSAPLG00000013350
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013902
15266017 - 15346204
80188