Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_153116_154392_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

153116 - 154392

Intron Length:

1277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTAAC

U12 Branch Point Sequence:

TTTCTTTTTACA

Flanking Amino Acid:

DFPSTCSKKKVDRKSFCTIH

Intron Amino Acid Position:

281

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.1

84.6

33.3

Major BPS

54.3

0.11

1.2

57.5

37.5

Major PPT

95.3

1.02

0.5

91.2

20.6

Minor 5ss

-0.5

66.7

44.2

Minor BPS

63.5

0.42

1.6

76.13

34.5

Associated Gene:

Gene:

ARNTL

Ensembl Gene ID:

ENSAPLG00000003885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004089

143668 - 169868

26201