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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15317094_15335024_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15317094 - 15335024
Intron Length:
17931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TAATCTTCACCC
Flanking Amino Acid:
CFDDSDEKECPKAKSKCGAT
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.1
38.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
34.8
-1.7
3.2
48.1
41.4
Minor BPS
52.4
0.06
1.8
64.71
40.7

Associated Gene:

Gene:
LDLRAD3
Ensembl Gene ID:
ENSAPLG00000013350
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013902
15266017 - 15346204
80188