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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_154543_157201_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
154543 - 157201
Intron Length:
2659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCTTCCTCACTT
Flanking Amino Acid:
APRERLIDAKTGLPVKTDVT
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.3
0.64
0.9
72.3
37.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
55.6
0.25
1.9
72.73
44.5

Associated Gene:

Gene:
ARNTL
Ensembl Gene ID:
ENSAPLG00000003885
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004089
143668 - 169868
26201