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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_154579_156438_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
154579 - 156438
Intron Length:
1860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTAAA
5'SS Class:
major
3'SS Sequence:
CTAACTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCCCTAACT
Flanking Amino Acid:
ANRGSEEAFFEACKKGDRTG
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.8
0.67
0.9
76.7
37
Minor 5ss
28.3
-2.5
2.8
29
38.4
Minor BPS
73.7
0.82
1.8
92.91
35.6

Associated Gene:

Gene:
BTBD10
Ensembl Gene ID:
ENSAPLG00000004601
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004752
121054 - 156470
35417