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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15482293_15493106_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15482293 - 15493106

Intron Length:

10814

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCGTAA

5'SS Class:

major

3'SS Sequence:

TCCCTGCCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTTAT

U12 Branch Point Sequence:

TCCCCCCCATTC

Flanking Amino Acid:

QLLLISCLPREYTVINENCP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.2

Major BPS

58.5

0.21

1.4

51.4

Major PPT

75.5

0.57

0.8

68.9

31.6

Minor 5ss

40.5

-1.1

3.4

55.4

48.8

Minor BPS

41.1

-0.6

48.53

41.7

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030066

15482220 - 15536937

54718

ENSAPLT00000013464

15482220 - 15537660

55441