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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15493284_15494013_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15493284 - 15494013

Intron Length:

730

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGTA

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TTTCTTCTAACA

Flanking Amino Acid:

NECDSCLIHPGCTIFENCKS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

81.7

32.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

84.3

0.77

0.8

81.1

Minor 5ss

35.2

-1.7

3.5

49.1

47.1

Minor BPS

63.1

0.41

1.6

77.1

33.3

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030066

15482220 - 15536937

54718

ENSAPLT00000013464

15482220 - 15537660

55441