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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15494143_15498901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15494143 - 15498901

Intron Length:

4759

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

TTTTGCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATTAT

U12 Branch Point Sequence:

GGTTCCTCAGAC

Flanking Amino Acid:

RAGWYGGDCMRCGQVLRASR

Intron Amino Acid Position:

127

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

73.4

36.4

Major BPS

60.8

0.27

1.2

51.8

43.6

Major PPT

81.6

0.71

0.8

73.7

36.9

Minor 5ss

38.5

-1.3

3.3

49.1

41.3

Minor BPS

49.3

-0

1.9

62.31

42.2

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030066

15482220 - 15536937

54718

ENSAPLT00000013464

15482220 - 15537660

55441