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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15503918_15530178_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15503918 - 15530178

Intron Length:

26261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATAG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTATCATTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

TTCCCCCTATCA

Flanking Amino Acid:

GFHAVFEEITVLDEKNCSDP

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

35.5

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

63.9

0.31

0.9

62.8

31.9

Minor 5ss

36.6

-1.5

3.1

46.6

48.7

Minor BPS

52.9

0.09

69.71

42.3

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030066

15482220 - 15536937

54718

ENSAPLT00000013464

15482220 - 15537660

55441