Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15534484_15534895_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15534484 - 15534895

Intron Length:

412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTCTC

5'SS Class:

strong_major

3'SS Sequence:

CATGTTTCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTCCAT

U12 Branch Point Sequence:

TCTTTGTCCATG

Flanking Amino Acid:

WSGRAPICIPICGKAENITL

Intron Amino Acid Position:

409

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

35.1

Major BPS

62.1

0.3

1.4

72.5

43.5

Major PPT

74.1

0.54

0.9

65.5

40.7

Minor 5ss

-1.7

3.1

44.9

36.9

Minor BPS

40.4

-0.9

2.5

50.15

44.9

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030066

15482220 - 15536937

54718

ENSAPLT00000013464

15482220 - 15537660

55441