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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15535192_15536400_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15535192 - 15536400

Intron Length:

1209

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTGTTCTCATTC

Flanking Amino Acid:

RDEKTIQNLRISAIIVHPNY

Intron Amino Acid Position:

508

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

38.4

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

78.3

0.64

0.8

69.9

36.6

Minor 5ss

29.2

-2.4

2.5

25.1

36.7

Minor BPS

52.4

0.05

1.8

65.78

40.6

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013464

15482220 - 15537660

55441

ENSAPLT00000030066

15482220 - 15536937

54718