Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15536695_15537507_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15536695 - 15537507

Intron Length:

813

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGCATC

5'SS Class:

major

3'SS Sequence:

TGTCACACTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAGAT

U12 Branch Point Sequence:

GTTGCTTTATCT

Flanking Amino Acid:

EQQYEDNGIQGLPAALVCLH

Intron Amino Acid Position:

606

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.3

76.2

39.9

Major BPS

79.2

0.72

Major PPT

66.3

0.37

0.9

56.3

39.6

Minor 5ss

39.4

-1.2

2.9

52.1

44.7

Minor BPS

63.8

0.51

1.7

80.3

41.9

Associated Gene:

Gene:

PAMR1

Ensembl Gene ID:

ENSAPLG00000012925

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013464

15482220 - 15537660

55441