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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15540793_15595580_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15540793 - 15595580
Intron Length:
54788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTTTTATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTACTTGATT
Flanking Amino Acid:
MASADGANNMPKQVE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
100
1.24
0.5
100
0
Major PPT
88.3
0.86
0.7
82.4
34
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
70.2
0.72
1.5
83.92
37.2

Associated Gene:

Gene:
SLC1A2
Ensembl Gene ID:
ENSAPLG00000012571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026166
15540776 - 15624210
83435
ENSAPLT00000022289
15540776 - 15624210
83435
ENSAPLT00000013133
15540776 - 15624210
83435