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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15602339_15605338_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15602339 - 15605338
Intron Length:
3000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGGAAC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCCCTATAG
Flanking Amino Acid:
LEFKDGMNVLGLIGFFIAFG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.9
42.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.3
0.82
0.6
81.7
23.4
Minor 5ss
30.7
-2.2
3.3
33.6
42.2
Minor BPS
53.7
-0
2.1
69.74
43

Associated Gene:

Gene:
SLC1A2
Ensembl Gene ID:
ENSAPLG00000012571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022289
15540776 - 15624210
83435
ENSAPLT00000013133
15540776 - 15624210
83435
ENSAPLT00000026166
15540776 - 15624210
83435