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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15605466_15607582_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15605466 - 15607582
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATGC
Flanking Amino Acid:
IVMKLVTMIMWYSPLGIACL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.8
0.85
0.7
80.6
31.5
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
46.3
-0.3
2.2
61.09
45

Associated Gene:

Gene:
SLC1A2
Ensembl Gene ID:
ENSAPLG00000012571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026166
15540776 - 15624210
83435
ENSAPLT00000022289
15540776 - 15624210
83435
ENSAPLT00000013133
15540776 - 15624210
83435