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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15607817_15611557_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15607817 - 15611557
Intron Length:
3741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACTCA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTTCTGTACTT
Flanking Amino Acid:
AWITALGTASSAGTLPVTFR
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
62.1
39.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
90.2
0.9
0.6
89
20.3
Minor 5ss
42.4
-0.8
3.1
57
47.2
Minor BPS
49.9
0.07
2.2
74.65
43.4

Associated Gene:

Gene:
SLC1A2
Ensembl Gene ID:
ENSAPLG00000012571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026166
15540776 - 15624210
83435
ENSAPLT00000022289
15540776 - 15624210
83435
ENSAPLT00000013133
15540776 - 15624210
83435