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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15619930_15622476_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15619930 - 15622476
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTTTC
5'SS Class:
major
3'SS Sequence:
TCCATGCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATATTT
Flanking Amino Acid:
HNSVIVDECKFIQHGDFQLC
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
73.4
38.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67.6
0.4
1
58
42.2
Minor 5ss
49.2
-0
2.8
70.3
40.3
Minor BPS
50.4
0.09
1.9
76
41.3

Associated Gene:

Gene:
SLC1A2
Ensembl Gene ID:
ENSAPLG00000012571
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022289
15540776 - 15624210
83435