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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15642068_15644213_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15642068 - 15644213

Intron Length:

2146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTAG

5'SS Class:

strong_major

3'SS Sequence:

AATTTCTTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTCCTTTTAATT

Flanking Amino Acid:

VVCIAVSSRRRCGQKKKLVI

Intron Amino Acid Position:

504

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

75.6

36.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.8

0.65

0.8

70.8

40.1

Minor 5ss

36.1

-1.6

3.3

45.9

49.3

Minor BPS

70.4

0.72

1.2

80.3

36.2

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034927

15641197 - 15698218

57022

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000034540

15641197 - 15698218

57022