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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15644293_15645370_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15644293 - 15645370

Intron Length:

1078

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TGACTCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAACAC

U12 Branch Point Sequence:

CCTCCCTTGACT

Flanking Amino Acid:

TSEPRSSQIPDWLIIVAALL

Intron Amino Acid Position:

478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.9

82.3

32.2

Major BPS

61.1

0.28

1.1

69.4

35.9

Major PPT

70.9

0.47

0.9

62.1

39.6

Minor 5ss

43.4

-0.7

3.1

60.6

44.5

Minor BPS

73.7

0.83

1.3

80.72

41.3

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034927

15641197 - 15698218

57022

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000031870

15641197 - 15698218

57022