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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15645494_15662808_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15645494 - 15662808

Intron Length:

17315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGGAAC

5'SS Class:

major

3'SS Sequence:

TTTTGTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

TTTGGAGTAACA

Flanking Amino Acid:

VAKKEYAPSTRSTTIIDGDH

Intron Amino Acid Position:

472

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

68.5

36.2

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

86.5

0.82

0.7

85.6

29.2

Minor 5ss

34.4

-1.8

3.2

44.6

38.4

Minor BPS

-0.3

2.6

68.02

44.4

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034540

15641197 - 15698218

57022