Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15645494_15667975_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15645494 - 15667975

Intron Length:

22482

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGATTT

5'SS Class:

major

3'SS Sequence:

TTTTGTTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAGAT

U12 Branch Point Sequence:

TTTGGAGTAACA

Flanking Amino Acid:

EDDERHRGSTRSTTIIDGDH

Intron Amino Acid Position:

390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

77.1

32.1

Major BPS

59.6

0.24

1.1

55.4

40.4

Major PPT

86.5

0.82

0.7

85.6

29.2

Minor 5ss

45.7

-0.4

3.1

67.1

38.9

Minor BPS

-0.3

2.6

68.02

44.4

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031870

15641197 - 15698218

57022