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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15655126_15656878_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15655126 - 15656878
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
ATCATCATAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GAGTTCATAATT
Flanking Amino Acid:
NDIEKKTSYTAMASSHGARQ
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
65.7
0.35
1
59.5
39.9
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
57.7
0.32
1.6
70.55
40.4

Associated Gene:

Gene:
CD44
Ensembl Gene ID:
ENSAPLG00000012207
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029682
15654079 - 15698218
44140
ENSAPLT00000023848
15654079 - 15708607
54529
ENSAPLT00000020935
15654079 - 15708607
54529
ENSAPLT00000046443
15654079 - 15697274
43196