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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15659633_15662808_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15659633 - 15662808
Intron Length:
3176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
ATTGTCCTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
ATTGTCCTAACA
Flanking Amino Acid:
VAKKEYAPSTTMDLQHGVLL
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
68.5
36.2
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
72.7
0.51
1
67
38.7
Minor 5ss
34.4
-1.8
3.2
44.6
38.4
Minor BPS
60.9
0.34
1.8
74.04
37.5

Associated Gene:

Gene:
CD44
Ensembl Gene ID:
ENSAPLG00000012207
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032120
15641197 - 15698181
56985
ENSAPLT00000028346
15641197 - 15698218
57022
ENSAPLT00000012731
15641197 - 15697274
56078
ENSAPLT00000034927
15641197 - 15698218
57022