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Intron Name: Anas_platyrhynchos_platyrhynchos_5_15662929_15663595_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15662929 - 15663595

Intron Length:

667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAAGAGC

5'SS Class:

major

3'SS Sequence:

ATCACCACAGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

TTTAACATCACC

Flanking Amino Acid:

KTQEPTQTTRDVTSSGNGSD

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.1

61.1

43.7

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

59.7

0.22

53.1

35.8

Minor 5ss

31.5

-2.1

3.2

34.2

41.9

Minor BPS

47.9

-0.1

2.2

69.45

41.3

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000034927

15641197 - 15698218

57022

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000032120

15641197 - 15698181

56985