Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15668072 - 15669239

Intron Length:

1168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGATG

5'SS Class:

strong_major

3'SS Sequence:

CATCATTATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TAATCTTTCATC

Flanking Amino Acid:

GEKEFPVTNSDDEISPTSTD

Intron Amino Acid Position:

228

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

75.2

40.6

Major BPS

87.6

0.93

0.9

89.3

Major PPT

71.9

0.49

65.1

39.8

Minor 5ss

-1.6

3.3

45.6

43.8

Minor BPS

59.3

0.28

1.7

68.05

37.8

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000029682

15654079 - 15698218

44140

ENSAPLT00000034927

15641197 - 15698218

57022

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15668072_15669239_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: