Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15669480 - 15669761

Intron Length:

282

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTACTGTAT

5'SS Class:

major

3'SS Sequence:

CTCTTTCCTATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TGGGTATTAATA

Flanking Amino Acid:

TSFLSNQGEIVIDNEDGSRY

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

68.7

38.6

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

81.3

0.7

76.6

25.7

Minor 5ss

37.4

-1.4

3.5

55.6

48.6

Minor BPS

0.03

1.7

60.44

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000029682

15654079 - 15698218

44140

ENSAPLT00000034927

15641197 - 15698218

57022

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15669480_15669761_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: