Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15669834 - 15671463

Intron Length:

1630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

CTTAAATTAATA

Flanking Amino Acid:

RYDAYCYNATETRDKACEPI

Intron Amino Acid Position:

124

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

28.6

Major BPS

0.82

0.8

24.9

Major PPT

89.3

0.88

0.6

87.5

22.7

Minor 5ss

42.4

-0.8

3.1

57.6

47.1

Minor BPS

52.5

0.07

1.8

66.42

39.8

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000029682

15654079 - 15698218

44140

ENSAPLT00000034927

15641197 - 15698218

57022

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15669834_15671463_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: