Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15671601 - 15673549

Intron Length:

1949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGAAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTACTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TTCCTCTGTACT

Flanking Amino Acid:

KAHELGFETCRYGFVVGYIV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

77.3

32.6

Major BPS

0.72

78.4

31.2

Major PPT

74.1

0.54

0.9

65.2

40.8

Minor 5ss

30.9

-2.2

3.2

46.4

Minor BPS

52.3

0.15

1.8

74.02

42.4

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000032120

15641197 - 15698181

56985

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000029682

15654079 - 15698218

44140

ENSAPLT00000034927

15641197 - 15698218

57022

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15671601_15673549_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: