Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15673716 - 15697207

Intron Length:

23492

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCAATAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTTCTTTCAAT

Flanking Amino Acid:

CLLKLCLTETQFNVSCRYRG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

1.2

87.9

29.3

Major BPS

88.7

0.96

0.8

36.5

Major PPT

72.5

0.51

67.2

36.9

Minor 5ss

47.5

-0.2

2.8

66.5

37.9

Minor BPS

68.2

0.65

1.8

88.96

35.8

Associated Gene:

Gene:

CD44

Ensembl Gene ID:

ENSAPLG00000012207

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031870

15641197 - 15698218

57022

ENSAPLT00000046443

15654079 - 15697274

43196

ENSAPLT00000020935

15654079 - 15708607

54529

ENSAPLT00000029682

15654079 - 15698218

44140

ENSAPLT00000034927

15641197 - 15698218

57022

ENSAPLT00000012731

15641197 - 15697274

56078

ENSAPLT00000028346

15641197 - 15698218

57022

ENSAPLT00000034540

15641197 - 15698218

57022

ENSAPLT00000023848

15654079 - 15708607

54529

ENSAPLT00000032120

15641197 - 15698181

56985

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15673716_15697207_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: