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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15697319_15697872_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15697319 - 15697872
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTTGT
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
GCAGGCTTAACA
Flanking Amino Acid:
LRVQAGTFWKACKDLCFLPN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
71.1
41.6
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
84.3
0.77
0.7
80.2
25.1
Minor 5ss
37.2
-1.4
3
51
45.3
Minor BPS
53
0.09
1.9
60.61
45.2

Associated Gene:

Gene:
CD44
Ensembl Gene ID:
ENSAPLG00000012207
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034540
15641197 - 15698218
57022
ENSAPLT00000031870
15641197 - 15698218
57022
ENSAPLT00000029682
15654079 - 15698218
44140
ENSAPLT00000028346
15641197 - 15698218
57022
ENSAPLT00000034927
15641197 - 15698218
57022