Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15716902_15723466_R

Intron Information:

Intron Rank:

137511

Intron Class:

major

Intron Phase:

Intron Coordinates:

15716902 - 15723466

Intron Length:

6565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTGTTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GCATCTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.9

35.2

Major BPS

83.9

0.84

73.9

41.3

Major PPT

79.9

0.67

0.9

37.3

Minor 5ss

44.8

-0.6

2.6

56.7

47.6

Minor BPS

58.3

0.34

1.6

69.05

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021457

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033569

15715914 - 15723542

7629