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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15737565_15749734_R

Intron Information:

Intron Rank:
128936
Intron Class:
major
Intron Phase:
Intron Coordinates:
15737565 - 15749734
Intron Length:
12170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTTGTATTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
77.9
31.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
36.4
-1.5
2.9
48.3
41.8
Minor BPS
57.4
0.21
2
70.71
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016515
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017997
15737403 - 15750070
12668