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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15749815_15752316_F

Intron Information:

Intron Rank:
132941
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
15749815 - 15752316
Intron Length:
2502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGCAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
58.3
0.19
1.1
59.7
34.7
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
55.6
0.26
1.8
76.67
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021523
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045324
15749529 - 15753360
3832