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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15770627_15775955_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15770627 - 15775955
Intron Length:
5329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
GIQEIAASAKALAKKARDGK
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.5
40.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
0.8
77.4
31.1
Minor 5ss
36.5
-1.5
3.6
56
48.1
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
PDHX
Ensembl Gene ID:
ENSAPLG00000011686
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012236
15770136 - 15807049
36914