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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15776115_15778252_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15776115 - 15778252
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAC
U12 Branch Point Sequence:
TGTTCTTCTACC
Flanking Amino Acid:
IIKATAVTLKQMPDVNATWD
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
51.6
0.04
1.3
53.8
41.6
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
57.3
0.21
1.9
71.83
39.3

Associated Gene:

Gene:
PDHX
Ensembl Gene ID:
ENSAPLG00000011686
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012236
15770136 - 15807049
36914