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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15780730_15781397_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15780730 - 15781397
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
TGATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATG
Flanking Amino Acid:
LSTPGQPAAPGTFTEIPASN
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
72.7
39.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.9
0.76
0.8
81.4
36
Minor 5ss
43.2
-0.7
3.4
65.4
45.8
Minor BPS
60.1
0.18
1.6
61.99
40

Associated Gene:

Gene:
PDHX
Ensembl Gene ID:
ENSAPLG00000011686
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012236
15770136 - 15807049
36914