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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_15788726_15795876_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15788726 - 15795876
Intron Length:
7151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGGATT
5'SS Class:
major
3'SS Sequence:
GCTTTAAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTGCTTTAAAT
Flanking Amino Acid:
SDDGVLAKILVEEGSKNVRL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
75.2
40.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
67
0.38
1
64.3
40.8
Minor 5ss
36.9
-1.5
3.6
53.5
45
Minor BPS
70.2
0.71
1.5
83.47
37.5

Associated Gene:

Gene:
PDHX
Ensembl Gene ID:
ENSAPLG00000011686
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012236
15770136 - 15807049
36914